Об этом курсе: Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Автор: Johns Hopkins University
Преподаватели: Kasper Daniel Hansen, PhD, Assistant Professor, Biostatistics and Genetic Medicine
Bloomberg School of Public Health
| Основные сведения | Курс 6 из 8 — Genomic Data Science Specialization |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Week One
The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
16 видео, 3 материала для самостоятельного изучения
- Leitura: Welcome
- Leitura: Syllabus
- Leitura: Pre Course Survey
- Видео: Installing R on A Mac
- Видео: Installing R Studio on a Mac
- Видео: What is Bioconductor
- Видео: Installing Bioconductor
- Видео: The Bioconductor Website
- Видео: Useful Online Resources
- Видео: R Base Types
- Видео: GRanges - Overview
- Видео: IRanges - Basic Usage
- Видео: GenomicRanges - GRanges
- Видео: GenomicRanges - Basic GRanges Usage
- Видео: GenomicRanges - seqinfo
- Видео: AnnotationHub
- Видео: Usecase: AnnotationHub and GRanges, part 1
- Видео: Usecase: AnnotationHub and GRanges, part 2
Оцениваемый: Quiz 1
НЕДЕЛЯ 2
Week Two
In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
8 видео
- Видео: BSgenome
- Видео: Biostrings - Matching
- Видео: BSgenome - Views
- Видео: GenomicRanges - Rle
- Видео: GenomicRanges - Lists
- Видео: GenomicFeatures
- Видео: rtracklayer - Data Import
Оцениваемый: Quiz 2
НЕДЕЛЯ 3
Week Three
In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
9 видео
- Видео: Annotation Overview
- Видео: ExpressionSet Overview
- Видео: ExpressionSet
- Видео: SummarizedExperiment
- Видео: GEOquery
- Видео: biomaRt
- Видео: R S4 Classes
- Видео: R S4 Methods
Оцениваемый: Quiz 3
НЕДЕЛЯ 4
Week Four
In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi
7 видео, 1 материал для самостоятельного изучения
- Видео: Short Read
- Видео: Rsamtools
- Видео: oligo
- Видео: limma
- Видео: minfi
- Видео: Count-based RNA-seq analysis
- Leitura: Post Course Survey
Оцениваемый: Quiz 4
Часто задаваемые вопросы
Как это работает
Trabalho
Cada curso é como um livro didático interativo, com vídeos pré-gravados, testes e projetos.
Ajuda dos seus colegas
Conecte-se com milhares de outros aprendizes, debata ideias, discuta sobre os materiais do curso e obtenha ajuda para dominar conceitos.
Certificados
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Авторы
Johns Hopkins University
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Стоимость
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Рейтинги и отзывы
It's very helpful in learning genomic data science. I think it's a little difficult in the beginning. The instructor have some accent, which made me even harder to get into it.
Good course, although some previous experience with R is required and that was not clearly stated beforehand. Moreover it would be better to have a more introductory course to R.
A great introduction to Bioconductor! The course is very hands-on, so be ready to use R extensively.
Coursera делает лучшее в мире образование доступным каждому, предлагая онлайн-курсы от ведущих университетов и организаций.
© Coursera Inc., 2018 Все права защищены.
The lessons are fairly easy to follow - although the transcript needs re-writing so that the correct words are identified to the speech. I spent a lot of time trying to decipher one or two key words.
The quizzes seemed to test on concepts not yet taught.. perhaps familiar to other Bioinformaticians.. so they were quite tough and required a lot of time to finish.