Об этом курсе: Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Автор: Университет Джонса Хопкинса
Преподаватели: Kasper Daniel Hansen, PhD, Assistant Professor, Biostatistics and Genetic Medicine
Bloomberg School of Public Health
| Основные сведения | Course 6 of 8 in the Genomic Data Science Specialization |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Week One
The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
16 видео, 3 материалов для самостоятельного изучения
- Reading: Welcome
- Reading: Syllabus
- Reading: Pre Course Survey
- Видео: Installing R on A Mac
- Видео: Installing R Studio on a Mac
- Видео: What is Bioconductor
- Видео: Installing Bioconductor
- Видео: The Bioconductor Website
- Видео: Useful Online Resources
- Видео: R Base Types
- Видео: GRanges - Overview
- Видео: IRanges - Basic Usage
- Видео: GenomicRanges - GRanges
- Видео: GenomicRanges - Basic GRanges Usage
- Видео: GenomicRanges - seqinfo
- Видео: AnnotationHub
- Видео: Usecase: AnnotationHub and GRanges, part 1
- Видео: Usecase: AnnotationHub and GRanges, part 2
Оцениваемый: Quiz 1
НЕДЕЛЯ 2
Week Two
In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
8 видео
- Видео: BSgenome
- Видео: Biostrings - Matching
- Видео: BSgenome - Views
- Видео: GenomicRanges - Rle
- Видео: GenomicRanges - Lists
- Видео: GenomicFeatures
- Видео: rtracklayer - Data Import
Оцениваемый: Quiz 2
НЕДЕЛЯ 3
Week Three
In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
9 видео
- Видео: Annotation Overview
- Видео: ExpressionSet Overview
- Видео: ExpressionSet
- Видео: SummarizedExperiment
- Видео: GEOquery
- Видео: biomaRt
- Видео: R S4 Classes
- Видео: R S4 Methods
Оцениваемый: Quiz 3
НЕДЕЛЯ 4
Week Four
In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi
7 видео, 1 материал для самостоятельного изучения
- Видео: Short Read
- Видео: Rsamtools
- Видео: oligo
- Видео: limma
- Видео: minfi
- Видео: Count-based RNA-seq analysis
- Reading: Post Course Survey
Оцениваемый: Quiz 4
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Авторы
Университет Джонса Хопкинса
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Стоимость
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| Получить итоговую оценку | Доступен |
| Earn a shareable Course Certificate | Доступен |
Рейтинги и отзывы
Good course, although some previous experience with R is required and that was not clearly stated beforehand. Moreover it would be better to have a more introductory course to R.
A great introduction to Bioconductor! The course is very hands-on, so be ready to use R extensively.
Amazing course, motivated me to use bio conductor for descriptive seq studies of DNA.
Coursera делает лучшее в мире образование доступным каждому, предлагая онлайн-курсы от ведущих университетов и организаций.
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QZ
It's very helpful in learning genomic data science. I think it's a little difficult in the beginning. The instructor have some accent, which made me even harder to get into it.