Об этом курсе: Introduces to the commands that you need to manage and analyze directories, files, and large sets of genomic data. This is the fourth course in the Genomic Big Data Science Specialization from Johns Hopkins University.
Автор: Johns Hopkins University
Преподаватели: Liliana Florea, PhD, Assistant Professor
McKusick-Nathans Institute of Genetic Medicine
| Основные сведения | Course 5 of 8 in the Genomic Data Science Specialization |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Basic Unix Commands
In this module, you will be introduced to command Line Tools for Genomic Data Science
12 видео, 5 материалов для самостоятельного изучения
- Reading: Welcome Message
- Reading: Syllabus
- Reading: VMBox Download & Instructions
- Reading: Pre-Course Survey
- Видео: Basic Unix Commands 1: Content Representation
- Видео: Basic Unix Commands 2: Files, Directories, Paths
- Видео: Basic Unix Commands 3: File Naming
- Видео: Basic Unix Commands 4: Content Creation
- Видео: Basic Unix Commands 5: Accessing Content I
- Видео: Basic Unix Commands 6: Accessing Content II
- Видео: Basic Unix Commands 7: Redirecting Content
- Видео: Basic Unix Commands 8: Querying Content
- Видео: Basic Unix Commands 9: Comparing Content
- Видео: Basic Unix Commands 10: Archiving Content
- Видео: Basic Unix Commands 11: Practical Exercises I
- Видео: Basic Unix Commands 12: Practical Exercises II
- Reading: Module 1 Exam Instructions **IMPORTANT**
Оцениваемый: Module 1 Quiz
Оцениваемый: Module 1 Exam
НЕДЕЛЯ 2
Week Two
In this module, we'll be taking a look at Sequences and Genomic Features in a sequence of 10 presentations.
11 видео, 1 материал для самостоятельного изучения
- Видео: Sequences and Genomic Features 1: Molecular Bio Primer
- Видео: Sequences and Genomic Features 2: Sequence Representation and Generation
- Видео: Sequences and Genomic Features 3: Annotation
- Видео: Sequences and Genomic Features 4.1: Alignment I
- Видео: Sequences and Genomic Features 4.2: Alignment II
- Видео: Sequences and Genomic Features 5: Recreating Sequences & Features
- Видео: Sequences and Genomic Features 6: Genomic Feature Retrieval
- Видео: Sequences and Genomic Features 7: SAMtools I
- Видео: Sequences and Genomic Features 8: SAMtools II
- Видео: Sequences and Genomic Features 9: BEDtools I
- Видео: Sequences and Genomic Features 10: BEDtools II
- Reading: Module 2 Exam Instructions **IMPORTANT**
Оцениваемый: Module 2 Quiz
Оцениваемый: Module 2 Exam
НЕДЕЛЯ 3
Week Three
In this module, we'll be going over Alignment and Sequence Variation in another sequence of 8 presentations.
8 видео, 1 материал для самостоятельного изучения
- Видео: Alignment & Sequence Variation 1: Overview
- Видео: Alignment & Sequence Variation 2: Alignment & Variant Detection Tools
- Видео: Alignment & Sequence Variation 3: VCF
- Видео: Alignment & Sequence Variation 4: Bowtie
- Видео: Alignment & Sequence Variation 5: BWA
- Видео: Alignment & Sequence Variation 6: SAMtools (mpileup)
- Видео: Alignment & Sequence Variation 7: BCFtools
- Видео: Alignment & Sequence Variation 8: Variant Calling
- Reading: Module 3 Exam Instructions **IMPORTANT**
Оцениваемый: Module 3 Quiz
Оцениваемый: Module 3 Exam
НЕДЕЛЯ 4
Week Four
In this module, we'll be going over Tools for Transcriptomics in a sequence of 6 presentations.
8 видео, 2 материалов для самостоятельного изучения
- Видео: Tools for Transcriptomics 1: Overview
- Видео: Tools for Transcriptomics 2: RNA-seq
- Видео: Tools for Transcriptomics 3.1: Tophat I
- Видео: Tools for Transcriptomics 3.2: Tophat II
- Видео: Tools for Transcriptomics 4: Cufflinks
- Видео: Tools for Transcriptomics 5: Cuffdiff
- Видео: Tools for Transcriptomics 6.1: Integrated Genomics Viewer I
- Видео: Tools for Transcriptomics 6.2: Integrated Genomics Viewer II
- Reading: Module 4 Exam Instructions **IMPORTANT**
- Reading: Post-Course Survey
Оцениваемый: Module 4 Quiz
Оцениваемый: Module 4 Exam
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Авторы
Johns Hopkins University
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Стоимость
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Рейтинги и отзывы
A really hard introduction to bioinformatics pipelines, it was difficult but was stimulant!
This was one of the most valuable courses I have taken online.
Thank you
Great course. I think it should be the first in the whole series.
Coursera делает лучшее в мире образование доступным каждому, предлагая онлайн-курсы от ведущих университетов и организаций.
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EL
Clear, very practical and applicable