We will learn computational methods -- algorithms and data structures -- for analyzing DNA sequencing data. We will learn a little about DNA, genomics, and how DNA sequencing is used. We will use Python to implement key algorithms and data structures and to analyze real genomes and DNA sequencing datasets.
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Об этом курсе
Приобретаемые навыки
- Bioinformatics Algorithms
- Algorithms
- Python Programming
- Algorithms On Strings
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Университет Джонса Хопкинса
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Программа курса: что вы изучите
DNA sequencing, strings and matching
This module we begin our exploration of algorithms for analyzing DNA sequencing data. We'll discuss DNA sequencing technology, its past and present, and how it works.
Preprocessing, indexing and approximate matching
In this module, we learn useful and flexible new algorithms for solving the exact and approximate matching problems. We'll start by learning Boyer-Moore, a fast and very widely used algorithm for exact matching
Edit distance, assembly, overlaps
This week we finish our discussion of read alignment by learning about algorithms that solve both the edit distance problem and related biosequence analysis problems, like global and local alignment.
Algorithms for assembly
In the last module we began our discussion of the assembly problem and we saw a couple basic principles behind it. In this module, we'll learn a few ways to solve the alignment problem.
Рецензии
- 5 stars80,88 %
- 4 stars14,71 %
- 3 stars3,01 %
- 2 stars0,50 %
- 1 star0,88 %
Лучшие отзывы о курсе АЛГОРИТМЫ ДЛЯ СЕКВЕНИРОВАНИЯ ДНК
Highly eloquent instructors that make intricate concepts accessible and fun to learn. Would definitely help if you have some programming or bioinformatics background beforehand.
Very well prepared, from basics up to all commonly used techniques in bioinformatics. Prerequisites in Python is a plus, but not even necessary.
One of the most useful courses I have joined. Many thanks to the instructors for these quality lectures and for the time spent to deliver the information as easily as possible!
This is the best course so far! Teacher is amazing! You have to spend some time on this course, but "at the end of the day" it is worth it.
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