World and internet is full of textual information. We search for information using textual queries, we read websites, books, e-mails. All those are strings from the point of view of computer science. To make sense of all that information and make search efficient, search engines use many string algorithms. Moreover, the emerging field of personalized medicine uses many search algorithms to find disease-causing mutations in the human genome. In this online course you will learn key pattern matching concepts: tries, suffix trees, suffix arrays and even the Burrows-Wheeler transform.
Этот курс входит в специализацию ''Специализация Структуры и алгоритмы данных'
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Калифорнийский университет в Сан-Диего
НИУ ВШЭ
Специализация Структуры и алгоритмы данныхКалифорнийский университет в Сан-ДиегоОб этом курсе
Недавно просмотрено: 18 061
Гибкие сроки
Назначьте сроки сдачи в соответствии со своим графиком.
Сертификат, ссылками на который можно делиться с другими людьми
Получите сертификат по завершении
100% онлайн
Начните сейчас и учитесь по собственному графику.
Курс 4 из 6 в программе
Средний уровень
Прибл. 18 часов на выполнение
Английский
Субтитры: Арабский, Французский, Португальский (Европа), Итальянский, Вьетнамский, Немецкий, Русский, Английский, Испанский
Приобретаемые навыки
- Suffix Tree
- Suffix Array
- Knuth–Morris–Pratt (KMP) Algorithm
- Algorithms On Strings
Гибкие сроки
Назначьте сроки сдачи в соответствии со своим графиком.
Сертификат, ссылками на который можно делиться с другими людьми
Получите сертификат по завершении
100% онлайн
Начните сейчас и учитесь по собственному графику.
Курс 4 из 6 в программе
Средний уровень
Прибл. 18 часов на выполнение
Английский
Субтитры: Арабский, Французский, Португальский (Европа), Итальянский, Вьетнамский, Немецкий, Русский, Английский, Испанский
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Калифорнийский университет в Сан-Диего
UC San Diego is an academic powerhouse and economic engine, recognized as one of the top 10 public universities by U.S. News and World Report. Innovation is central to who we are and what we do. Here, students learn that knowledge isn't just acquired in the classroom—life is their laboratory.
НИУ ВШЭ
HSE University is one of the top research universities in Russia. Established in 1992 to promote new research and teaching in economics and related disciplines, it now offers programs at all levels of university education across an extraordinary range of fields of study including business, sociology, cultural studies, philosophy, political science, international relations, law, Asian studies, media and communicamathematics, engineering, and more.
Программа курса: что вы изучите
5 ч. на завершение
Suffix Trees
How would you search for a longest repeat in a string in LINEAR time? In 1973, Peter Weiner came up with a surprising solution that was based on suffix trees, the key data structure in pattern matching. Computer scientists were so impressed with his algorithm that they called it the Algorithm of the Year. In this lesson, we will explore some key ideas for pattern matching that will - through a series of trials and errors - bring us to suffix trees.
5 ч. на завершение
5 видео ((всего 27 мин.)), 7 материалов для самостоятельного изучения, 1 тест
4 ч. на завершение
Burrows-Wheeler Transform and Suffix Arrays
Although EXACT pattern matching with suffix trees is fast, it is not clear how to use suffix trees for APPROXIMATE pattern matching. In 1994, Michael Burrows and David Wheeler invented an ingenious algorithm for text compression that is now known as Burrows-Wheeler Transform. They knew nothing about genomics, and they could not have imagined that 15 years later their algorithm will become the workhorse of biologists searching for genomic mutations. But what text compression has to do with pattern matching??? In this lesson you will learn that the fate of an algorithm is often hard to predict – its applications may appear in a field that has nothing to do with the original plan of its inventors.
4 ч. на завершение
5 видео ((всего 30 мин.)), 4 материалов для самостоятельного изучения, 1 тест
3 ч. на завершение
Knuth–Morris–Pratt Algorithm
Congratulations, you have now learned the key pattern matching concepts: tries, suffix trees, suffix arrays and even the Burrows-Wheeler transform! However, some of the results Pavel mentioned remain mysterious: e.g., how can we perform exact pattern matching in O(|Text|) time rather than in O(|Text|*|Pattern|) time as in the naïve brute force algorithm? How can it be that matching a 1000-nucleotide pattern against the human genome is nearly as fast as matching a 3-nucleotide pattern??? Also, even though Pavel showed how to quickly construct the suffix array given the suffix tree, he has not revealed the magic behind the fast algorithms for the suffix tree construction!In this module, Miсhael will address some algorithmic challenges that Pavel tried to hide from you :) such as the Knuth-Morris-Pratt algorithm for exact pattern matching and more efficient algorithms for suffix tree and suffix array construction.
3 ч. на завершение
5 видео ((всего 35 мин.)), 2 материалов для самостоятельного изучения, 1 тест
5 ч. на завершение
Constructing Suffix Arrays and Suffix Trees
In this module we continue studying algorithmic challenges of the string algorithms. You will learn an O(n log n) algorithm for suffix array construction and a linear time algorithm for construction of suffix tree from a suffix array. You will also implement these algorithms and the Knuth-Morris-Pratt algorithm in the last Programming Assignment in this course.
5 ч. на завершение
11 видео ((всего 76 мин.)), 5 материалов для самостоятельного изучения, 2 тестов
Рецензии
Лучшие отзывы о курсе СТРОКОВЫЕ АЛГОРИТМЫ
от партнера CS7 июля 2019 г.
Very good course. String algorithms are very important in day today life and one should really know how to solve command problems related to it. This course have described everything so well.
от партнера PA12 мая 2020 г.
course content was great but i personally feels some difficulties in the implementation part so the course is meant to be more implementation oriented . thank you for the wondorful course
от партнера NR18 окт. 2019 г.
Very well put together course. Challenging but understandable. I highly recommend you stick out. If you get stuck check the forums there's lots of helpful things there. Time well spent!
от партнера JM13 нояб. 2016 г.
It would be nice if you could deliver the problem's solutions after the course ended. I ran out of ideas for the BetterBWMatching problem and i couldn't overcome the time issues.
Специализация Структуры и алгоритмы данных: общие сведения
Computer science legend Donald Knuth once said “I don’t understand things unless I try to program them.” We also believe that the best way to learn an algorithm is to program it. However, many excellent books and online courses on algorithms, that excel in introducing algorithmic ideas, have not yet succeeded in teaching you how to implement algorithms, the crucial computer science skill that you have to master at your next job interview. We tried to fill this gap by forming a diverse team of instructors that includes world-leading experts in theoretical and applied algorithms at UCSD (Daniel Kane, Alexander Kulikov, and Pavel Pevzner), a chief data scientist at Yandex (Michael Levin), and a former software engineer at Google (Neil Rhodes). This unique combination of skills makes this Specialization different from other excellent MOOCs on algorithms that are all developed by theoretical computer scientists. While these MOOCs focus on theory, our Specialization is a mix of algorithmic theory/practice/applications with software engineering. You will learn algorithms by implementing nearly 100 coding problems in a programming language of your choice. To the best of knowledge, no other online course in Algorithms comes close to offering you a wealth of programming challenges (and puzzles!) that you may face at your next job interview. We invested over 3000 hours into designing our challenges as an alternative to multiple choice questions that you usually find in MOOCs.
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