This course provides demonstrations and exercises for performing common genomics-based analysis tasks of bacterial sequence data. It uses PATRIC, the PathoSystems Resource Integration Center, as the platform for analysis. PATRIC is the NIH/NIAID-funded bacterial Bioinformatics Resource Center, providing comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data.
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Bacterial Bioinformatics
Виргинский университетОб этом курсе
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Средний уровень
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
Прибл. 14 часов на выполнение
Английский
Субтитры: Французский, Португальский (Европа), Русский, Английский, Испанский
Чему вы научитесь
Learn how to assemble a bacterial genome
Learn how to annotate a bacterial genome
Learn how to generate a phylogenetic tree from a set of bacterial genomes
Learn how to perform basic comparative analyses of a set of bacterial genomes
Гибкие сроки
Назначьте сроки сдачи в соответствии со своим графиком.
100% онлайн
Начните сейчас и учитесь по собственному графику.
Средний уровень
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
Прибл. 14 часов на выполнение
Английский
Субтитры: Французский, Португальский (Европа), Русский, Английский, Испанский
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Виргинский университет
A premier institution of higher education, The University of Virginia offers outstanding academics, world-class faculty, and an inspiring, supportive environment. Founded by Thomas Jefferson in 1819, the University is guided by his vision of discovery, innovation, and development of the full potential of students from all walks of life. Through these courses, global learners have an opportunity to study with renowned scholars and thought leaders.
Программа курса: что вы изучите
1 ч. на завершение
Introduction
This lesson provides an introduction to PATRIC, the PathoSystems Resource Integration Center, a Bioinformatics Resource Center dedicated to supporting bacterial research. PATRIC provides comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data. PATRIC will serve as the platform for the analysis methods covered in this module.
1 ч. на завершение
7 видео ((всего 42 мин.))
1 ч. на завершение
Assembly
This lesson provides step-by-step instructions for assembling a genome from a set of bacterial sequence reads using the PATRIC Genome Assembly Service. Exercises are included to enhance comprehension and build proficiency in using the assembly process.
1 ч. на завершение
7 видео ((всего 49 мин.))
2 ч. на завершение
Annotation
This lesson provides step-by-step instructions for annotating a genome from contigs using the PATRIC Genome Annotation Service. Exercises are included to enhance comprehension and build proficiency in using the annotation process.
2 ч. на завершение
7 видео ((всего 77 мин.))
2 ч. на завершение
Comprehensive Genome Analysis
This lesson provides step-by-step instructions for assembling, annotating, and performing an automated analysis of a genome from a set of bacterial sequence reads using the PATRIC Comprehensive Genome Analysis Service. Exercises are included to enhance comprehension and build proficiency in using the service.
2 ч. на завершение
10 видео ((всего 101 мин.))
Рецензии
Лучшие отзывы о курсе BACTERIAL BIOINFORMATICS
от партнера WH20 дек. 2021 г.
I appreciate the instructors for this amazing course that sharpen my skills in the bacterial genome analysis.
от партнера PP23 дек. 2020 г.
very useful course , can solve a lot of problem in bacterium genome analysis easily
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