Об этом курсе: This course will assist you with recreating work that a previous coworker completed, revisiting a project you abandoned some time ago, or simply reproducing a document with a consistent format and workflow. Incomplete information about how the work was done, where the files are, and which is the most recent version can give rise to many complications. This course focuses on the proper documentation creation process, allowing you and your colleagues to easily reproduce the components of your workflow. Throughout this course, you'll receive helpful demonstrations of RStudio and the R Markdown language and engage in active learning opportunities to help you build a professional online portfolio.
Автор: Университет Эмори
Преподаватели: Melinda Higgins, Associate Research Professor/Senior Biostatistician
School of Nursing
| Уровень | Beginner |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Introduction to Reproducible Research and Dynamic Documentation
This module provides an introduction to the concepts surrounding reproducibility and the Open Science movement, RStudio and GitHub, and foundational cases and authors in the field.
11 видео, 6 материалов для самостоятельного изучения, 1 practice quiz
- Видео: Welcome and an Introduction to the Course
- Reading: Course Outline and Grading Information
- Видео: Welcome to Week 1!
- Видео: History and Importance of Reproducibility
- Видео: Dynamic Documentation and Literate Programming
- Видео: Components and Examples of Reproducibility
- Reading: Articles, Resources, and File Organization Examples
- Reading: [Lecture Prep] - Links for R and RStudio
- Видео: R and RStudio Introduction
- Reading: R and RStudio Resources
- Reading: [Lecture Prep] - GIT and GitHub
- Видео: Git and Github - Part 1
- Видео: Git and Github - Part 2
- Видео: Git and Github - Part 3
- Видео: Creating Your First Document
- Reading: Books on Reproducibility and Tools of the Trade
- Practice Quiz: Practice
- Видео: Wrap-Up
Оцениваемый: Week 1
НЕДЕЛЯ 2
R Markdown: Syntax, Document, and Presentation Formats
This module explores the R Markdown syntax to format and customize the layout of presentations or reports and will also look at inserting and creating objects such as tables, images, or video within documents.
8 видео, 11 материалов для самостоятельного изучения, 1 practice quiz
- Видео: Welcome to Week 2!
- Reading: [Lecture Prep] - Links for R Markdown and YAML
- Видео: Introduction to R Markdown and the YAML Header
- Reading: [Lecture Prep] - R Markdown File
- Видео: R Markdown Syntax
- Reading: R Markdown Resources
- Видео: Figures, Tables, and Equations
- Reading: Resources for Tables and Equations
- Reading: [Lecture Prep] - Media and R Markdown Files
- Видео: Images, Videos, and Footnotes
- Reading: Resource for Embedding Videos
- Reading: [Lecture Prep] - R Markdown File
- Видео: Presentation Formats
- Reading: Resources for the Presentation Format
- Reading: [Lecture Prep] - Link for Bookdown Demo
- Видео: Book Format
- Reading: Resources for the Book Format
- Practice Quiz: Practice
- Reading: [Graded Quiz Prep] - Week 2 Instructions
- Видео: Wrap-Up
Оцениваемый: Week 2
НЕДЕЛЯ 3
R Markdown Templates: Processing and Customizing
This module goes further with R Markdown to help turn documents, reports, and presentations into templates for easier automation, reproducibility, and customization.
9 видео, 6 материалов для самостоятельного изучения, 1 practice quiz
- Видео: Week 3 Introduction
- Reading: [Lecture Prep] - CSS File
- Видео: Customizing an HTML Document
- Reading: Note on MD files
- Видео: Customizing a WORD Document
- Видео: Customizing Other Document Formats
- Reading: Resources for Customizing Documents
- Reading: [Lecture Prep] - R Script File
- Видео: Working with R Packages
- Reading: [Lecture Prep] - Code File
- Видео: Building a Document Template, Part 1
- Видео: Building a Document Template, Part 2
- Видео: Adding Parameters in a Document Template
- Reading: Resources for Parameters and Template Development
- Practice Quiz: Practice
- Видео: Wrap-Up
Оцениваемый: Week 3
НЕДЕЛЯ 4
Leveraging Custom Templates from Leading Scientific Journals
This module delves into custom templates available for websites, books, and scientific publishers, such as Elsevier and the IEEE, with the chance to create your first R Package.
6 видео, 3 материалов для самостоятельного изучения, 1 practice quiz
- Видео: Week 4 Introduction
- Reading: Custom Template Packages and References
- Видео: Examples and Demo of Existing Templates
- Видео: Exploring R Packages and Their Components and Files
- Reading: Resources for Packages and Forking Repositories
- Reading: [Lecture Prep] - Code File
- Видео: Create an R Markdown Template and Share It
- Видео: Create an R Package with an R Markdown Template
- Practice Quiz: Practice
- Видео: Wrap-Up
Оцениваемый: Week 4
НЕДЕЛЯ 5
Working in Teams and Disseminating Templates and Reports
This module focuses on helpful tips for sharing and using the templates you create, as well as methods for organizing content. We'll also look at a few web-publishing services.
6 видео, 2 материалов для самостоятельного изучения, 1 practice quiz
- Видео: Week 5 Introduction
- Reading: [Lecture Prep] - Code File
- Видео: Organizing Components - Files, Documents, and Codes
- Видео: Disseminate Your Files via RPubs and GitHub
- Reading: Resources on Dissemination
- Видео: Communicating to Your Team on How to Use Your Templates and Projects
- Видео: More Ways to Disseminate Your Files
- Practice Quiz: Practice
- Видео: Wrap-Up
Оцениваемый: Week 5
Часто задаваемые вопросы
Как это работает
Coursework
Each course is like an interactive textbook, featuring pre-recorded videos, quizzes and projects.
Help from Your Peers
Connect with thousands of other learners and debate ideas, discuss course material, and get help mastering concepts.
Certificates
Earn official recognition for your work, and share your success with friends, colleagues, and employers.
Авторы
Университет Эмори
Emory University, located in Atlanta, Georgia, is one of the world's leading research universities. Its mission is to create, preserve, teach and apply knowledge in the service of humanity.
Стоимость
| Приобрести курс | |
|---|---|
| Получить доступ к материалам курса | Доступен |
| Получить доступ к оцениваемым материалам курса | Доступен |
| Получить итоговую оценку | Доступен |
| Earn a shareable Course Certificate | Доступен |
Рейтинги и отзывы
Perfect amount of info for beginner and/or intermediate R user who has not taken full advantage of its capabilities (yet)
Coursera делает лучшее в мире образование доступным каждому, предлагая онлайн-курсы от ведущих университетов и организаций.
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TP
Especially if you are in the first 20 hours of learning to use Git, github, R|RStudio, R Markdown, I think this course will be well-worth your time; an efficient and friendly introduction to those tools/platforms.