Об этом курсе: This course will assist you with recreating work that a previous coworker completed, revisiting a project you abandoned some time ago, or simply reproducing a document with a consistent format and workflow. Incomplete information about how the work was done, where the files are, and which is the most recent version can give rise to many complications. This course focuses on the proper documentation creation process, allowing you and your colleagues to easily reproduce the components of your workflow. Throughout this course, you'll receive helpful demonstrations of RStudio and the R Markdown language and engage in active learning opportunities to help you build a professional online portfolio.
Автор: Emory University
Преподаватели: Melinda Higgins, Associate Research Professor/Senior Biostatistician
School of Nursing
| Уровень | Beginner |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Introduction to Reproducible Research and Dynamic Documentation
This module provides an introduction to the concepts surrounding reproducibility and the Open Science movement, RStudio and GitHub, and foundational cases and authors in the field.
11 видео, 6 материала для самостоятельного изучения, 1 тренировочный тест
- 阅读: Course Outline and Grading Information
- Видео: Welcome to Week 1!
- Видео: History and Importance of Reproducibility
- Видео: Dynamic Documentation and Literate Programming
- Видео: Components and Examples of Reproducibility
- 阅读: Articles, Resources, and File Organization Examples
- 阅读: [Lecture Prep] - Links for R and RStudio
- Видео: R and RStudio Introduction
- 阅读: R and RStudio Resources
- 阅读: [Lecture Prep] - GIT and GitHub
- Видео: Git and Github - Part 1
- Видео: Git and Github - Part 2
- Видео: Git and Github - Part 3
- Видео: Creating Your First Document
- 阅读: Books on Reproducibility and Tools of the Trade
- 练习测验: Practice
- Видео: Wrap-Up
Оцениваемый: Week 1
НЕДЕЛЯ 2
R Markdown: Syntax, Document, and Presentation Formats
This module explores the R Markdown syntax to format and customize the layout of presentations or reports and will also look at inserting and creating objects such as tables, images, or video within documents.
8 видео, 11 материала для самостоятельного изучения, 1 тренировочный тест
- 阅读: [Lecture Prep] - Links for R Markdown and YAML
- Видео: Introduction to R Markdown and the YAML Header
- 阅读: [Lecture Prep] - R Markdown File
- Видео: R Markdown Syntax
- 阅读: R Markdown Resources
- Видео: Figures, Tables, and Equations
- 阅读: Resources for Tables and Equations
- 阅读: [Lecture Prep] - Media and R Markdown Files
- Видео: Images, Videos, and Footnotes
- 阅读: Resource for Embedding Videos
- 阅读: [Lecture Prep] - R Markdown File
- Видео: Presentation Formats
- 阅读: Resources for the Presentation Format
- 阅读: [Lecture Prep] - Link for Bookdown Demo
- Видео: Book Format
- 阅读: Resources for the Book Format
- 练习测验: Practice
- 阅读: [Graded Quiz Prep] - Week 2 Instructions
- Видео: Wrap-Up
Оцениваемый: Week 2
НЕДЕЛЯ 3
R Markdown Templates: Processing and Customizing
This module goes further with R Markdown to help turn documents, reports, and presentations into templates for easier automation, reproducibility, and customization.
9 видео, 6 материала для самостоятельного изучения, 1 тренировочный тест
- 阅读: [Lecture Prep] - CSS File
- Видео: Customizing an HTML Document
- 阅读: Note on MD files
- Видео: Customizing a WORD Document
- Видео: Customizing Other Document Formats
- 阅读: Resources for Customizing Documents
- 阅读: [Lecture Prep] - R Script File
- Видео: Working with R Packages
- 阅读: [Lecture Prep] - Code File
- Видео: Building a Document Template, Part 1
- Видео: Building a Document Template, Part 2
- Видео: Adding Parameters in a Document Template
- 阅读: Resources for Parameters and Template Development
- 练习测验: Practice
- Видео: Wrap-Up
Оцениваемый: Week 3
НЕДЕЛЯ 4
Leveraging Custom Templates from Leading Scientific Journals
This module delves into custom templates available for websites, books, and scientific publishers, such as Elsevier and the IEEE, with the chance to create your first R Package.
6 видео, 3 материала для самостоятельного изучения, 1 тренировочный тест
- 阅读: Custom Template Packages and References
- Видео: Examples and Demo of Existing Templates
- Видео: Exploring R Packages and Their Components and Files
- 阅读: Resources for Packages and Forking Repositories
- 阅读: [Lecture Prep] - Code File
- Видео: Create an R Markdown Template and Share It
- Видео: Create an R Package with an R Markdown Template
- 练习测验: Practice
- Видео: Wrap-Up
Оцениваемый: Week 4
НЕДЕЛЯ 5
Working in Teams and Disseminating Templates and Reports
This module focuses on helpful tips for sharing and using the templates you create, as well as methods for organizing content. We'll also look at a few web-publishing services.
6 видео, 2 материала для самостоятельного изучения, 1 тренировочный тест
- 阅读: [Lecture Prep] - Code File
- Видео: Organizing Components - Files, Documents, and Codes
- Видео: Disseminate Your Files via RPubs and GitHub
- 阅读: Resources on Dissemination
- Видео: Communicating to Your Team on How to Use Your Templates and Projects
- Видео: More Ways to Disseminate Your Files
- 练习测验: Practice
- Видео: Wrap-Up
Оцениваемый: Week 5
Часто задаваемые вопросы
Как это работает
课程作业
每门课程都像是一本互动的教科书，具有预先录制的视频、测验和项目。
来自同学的帮助
与其他成千上万的学生相联系，对想法进行辩论，讨论课程材料，并寻求帮助来掌握概念。
证书
获得正式认证的作业，并与朋友、同事和雇主分享您的成功。
Авторы
Emory University
Emory University, located in Atlanta, Georgia, is one of the world's leading research universities. Its mission is to create, preserve, teach and apply knowledge in the service of humanity.
Стоимость
| Приобрести курс | |
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| Получить доступ к материалам курса | Доступен |
| Получить доступ к оцениваемым материалам курса | Доступен |
| Получить итоговую оценку | Доступен |
| Earn a shareable Course Certificate | Доступен |
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