Об этом курсе
4.6
133 ratings
26 reviews
Neurohacking describes how to use the R programming language (https://cran.r-project.org/) and its associated package to perform manipulation, processing, and analysis of neuroimaging data. We focus on publicly-available structural magnetic resonance imaging (MRI). We discuss concepts such as inhomogeneity correction, image registration, and image visualization. By the end of this course, you will be able to: Read/write images of the brain in the NIfTI (Neuroimaging Informatics Technology Initiative) format Visualize and explore these images Perform inhomogeneity correction, brain extraction, and image registration (within a subject and to a template)....
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Только онлайн-курсы

Начните сейчас и учитесь по собственному графику.
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Гибкие сроки

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Intermediate Level

Промежуточный уровень

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Предполагаемая нагрузка: 4 weeks of study, 2-4 hours/week

Прибл. 11 ч. на завершение
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English

Субтитры: English

Приобретаемые навыки

R ProgrammingImage ProcessingBrainNeurology
Globe

Только онлайн-курсы

Начните сейчас и учитесь по собственному графику.
Calendar

Гибкие сроки

Назначьте сроки сдачи в соответствии со своим графиком.
Intermediate Level

Промежуточный уровень

Clock

Предполагаемая нагрузка: 4 weeks of study, 2-4 hours/week

Прибл. 11 ч. на завершение
Comment Dots

English

Субтитры: English

Программа курса: что вы изучите

1

Раздел
Clock
1 ч. на завершение

Introduction

...
Reading
3 видео (всего 30 мин.), 1 материал для самостоятельного изучения, 1 тест
Video3 видео
Introduction11мин
Structural MRI and R12мин
Reading1 материал для самостоятельного изучения
Syllabus10мин
Quiz1 практическое упражнение
Theme 1 Quiz16мин

2

Раздел
Clock
2 ч. на завершение

Neuroimaging: Formats and Visualization

In this section, we will discuss different formats that brain images come in, as well as some of the commonly done magnetic resonance imaging (MRI) scans....
Reading
7 видео (всего 74 мин.), 6 тестов
Video7 видео
The NIfTI Format9мин
Basic Visualization 19мин
Basic Visualization 29мин
Basic Data Manipulation9мин
Transformations and Smoothing14мин
Basic MRI Contrasts9мин
Quiz6 практического упражнения
Theme 2 Lecture 1 Quiz10мин
Theme 2 Lecture 2 Quiz10мин
Theme 2 Lecture 3 Quiz10мин
Theme 2 Lecture 4 Quiz10мин
Theme 2 Lecture 5 Quiz10мин
Theme 2 Lecture 6 Quiz10мин

3

Раздел
Clock
3 ч. на завершение

Image Processing

In this section, we will discuss the steps done to process brain MRI data. We will discuss inhomogeneity correction, brain extraction or skull stripping, and various image registration techniques....
Reading
9 видео (всего 71 мин.), 9 тестов
Video9 видео
Registration15мин
fslr: System Requirements8мин
Bias Field Correction Using fslr3мин
Brain Extraction using fslr5мин
Image Registration Using fslr5мин
Installing ANTsR5мин
Basic Data Manipulation with ANTsR4мин
Pre-Processing with ANTSR7мин
Quiz9 практического упражнения
Theme 3 Quiz 110мин
Theme 3 Quiz 210мин
Theme 3 Quiz 312мин
Theme 3 Quiz 410мин
Theme 3 Quiz 510мин
Theme 3 Quiz 610мин
Theme 3 Quiz 710мин
Theme 3 Quiz 810мин
Theme 3 Quiz 910мин

4

Раздел
Clock
3 ч. на завершение

Extended Image Processing

In this section, we will discuss the different types of registration and how one would go through processing a multi-sequence MRI scan, as well as wrapper functions that make the process much easier. We also cover interactive exploration of brain image data and tissue-level (white/gray matter and cerebrospinal fluid (CSF)) segmentation from a T1-weighted image....
Reading
11 видео (всего 101 мин.), 1 материал для самостоятельного изучения, 10 тестов
Video11 видео
Co-Registration using fslr9мин
Co-Registration using ANTsR9мин
Wrapper Functions for Processing Pipelines8мин
Across-Visit Co-Registration of T1 Images6мин
Rigid Registration to a Template8мин
Affine Registration of T1 to Template4мин
Nonlinear Registration of T1 to Template6мин
Getting ROI Anatomic Information from Non-Linear Registration12мин
Tissue-Level Segmentation7мин
Papayar: Interactively Viewing Images in R22мин
Reading1 материал для самостоятельного изучения
Papayar Script10мин
Quiz10 практического упражнения
Theme 4 Quiz 110мин
Theme 4 Quiz 210мин
Theme 4 Quiz 36мин
Theme 4 Quiz 410мин
Theme 4 Quiz 510мин
Theme 4 Quiz 610мин
Theme 4 Quiz 710мин
Theme 4 Quiz 810мин
Theme 4 Quiz 910мин
Theme 4 Quiz 1010мин
4.6

Лучшие рецензии

автор: BRFeb 9th 2017

I like that this course goes through most necessary steps, my only suggest would be to have one additional week where you go through everything all together, and then do some simple group analysis.

автор: ANJul 18th 2017

Perfect! Precise to the subject and provides a lot of hands-on details, which is, unfortunately, something that most other similar courses don't do. Absolutely loved it!

Преподавателя

Dr. Elizabeth Sweeney

Rice Academy Postdoctoral Fellow
Biostatistics

Ciprian M. Crainiceanu

Professor
Biostatstics

John Muschelli III

Assistant Scientist
Biostatistics

О Johns Hopkins University

The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world....

Часто задаваемые вопросы

  • Once you enroll for a Certificate, you’ll have access to all videos, quizzes, and programming assignments (if applicable). Peer review assignments can only be submitted and reviewed once your session has begun. If you choose to explore the course without purchasing, you may not be able to access certain assignments.

  • When you purchase a Certificate you get access to all course materials, including graded assignments. Upon completing the course, your electronic Certificate will be added to your Accomplishments page - from there, you can print your Certificate or add it to your LinkedIn profile. If you only want to read and view the course content, you can audit the course for free.

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