Об этом курсе: Learn to use the tools that are available from the Galaxy Project. This is the second course in the Genomic Big Data Science Specialization.
Автор: Университет Джонса Хопкинса
Преподаватели: James Taylor, PhD, Associate Professor of Biology and Computer Science
| Основные сведения | Course 2 of 8 in the Genomic Data Science Specialization |
| Язык | English |
| Как пройти курс | Чтобы пройти курс, выполните все оцениваемые задания. |
| Оценки пользователей |
Программа курса
НЕДЕЛЯ 1
Introduction
This week, we will present some of the research challenges that motivated the development of the Galaxy framework. We will then introduce Galaxy, describe what the Galaxy framework is, and look at different ways you can use it.
2 видео, 4 материалов для самостоятельного изучения
- Reading: Welcome
- Reading: Syllabus
- Reading: Pre-Course Survey
- Reading: A Note about AWS
- Видео: Challenges of Reproducibility
- Видео: Introduction to the Galaxy Platform
Оцениваемый: Module 1 Quiz
НЕДЕЛЯ 2
Galaxy 101
In this module and the following modules we will start to use Galaxy to perform different types of analysis.
3 видео
- Видео: Galaxy 101: Genomic Intervals
- Видео: Galaxy 101: Workflows
- Видео: Annotation, Sharing, and Publishing
Оцениваемый: Module 2 Quiz
НЕДЕЛЯ 3
Working with sequence data
In this module we will be studying sequence data quality control as well as ChIP-Sequence Analysis with MACS.
2 видео
- Видео: Sequence Data Quality Control
- Видео: ChIP-Sequence Analysis with MACS
Оцениваемый: Module 3 Quiz
НЕДЕЛЯ 4
RNA-seq & Running your own Galaxy
In these final modules, we'll take a look at working with sequence data and RNA-seq and at installing and running your own Galaxy.
4 видео, 2 материалов для самостоятельного изучения
- Reading: TopHat availability
- Видео: RNA-seq Analysis: Mapping
- Видео: RNA Sequence Analysis: Assembly Quantitation, and Differential Expression
- Видео: Installing Galaxy Locally
- Видео: Galaxy on the Cloud
- Reading: Post-Course Survey
Оцениваемый: Module 4 Quiz
Оцениваемый: Module 5 Quiz
Оцениваемый: Course Project
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Авторы
Университет Джонса Хопкинса
The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.
Стоимость
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Рейтинги и отзывы
Great Course if you are interested in dissecting the genome. Galaxy opens up this invisible world and allows even us little people to explore the world once reserved to only Academia.
Very fun and educational
Useful and lightweight course; except the final exam which is quite difficult, in my opinion.
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AD
A very informative and well-conducted course.